PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS550962.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 161aa    MW: 18408.3 Da    PI: 10.3067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS550962.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1349159199
                   EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 
                   f+k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +s++yvl++GW keFvk  gL +gD v ++ 
  EcS550962.10  49 FKKRLTQSDLGHLSRLLIRRDFLKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSRSYVLKGGWmKEFVKRRGLAAGDEVGIYW 145
                   899**************************98888777545558889999997766778888888*************668***************97 PP

                   -SS.SEE..EEEEE-S CS
            B3  85 dgr.sefelvvkvfrk 99 
                   d   s+f  +++v+rk
  EcS550962.10 146 DAIaSKF--HFSVLRK 159
                   7655666..8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1647159IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-549160IPR003340B3 DNA binding domain
PfamPF023621.2E-949158IPR003340B3 DNA binding domain
CDDcd100171.44E-1749158No hitNo description
Gene3DG3DSA:2.40.330.107.3E-1749159IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASLTNAESL IAEKKAKCKR TQKGKKEASG CGAEEVSTEL TLLFDPYKFK KRLTQSDLGH  60
LSRLLIRRDF LKSHFLRWMN EETVRQVESG KGADVIVRDM DTCSEHRLVF VFWASSRSYV  120
LKGGWMKEFV KRRGLAAGDE VGIYWDAIAS KFHFSVLRKA N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058723.11e-105PREDICTED: uncharacterized protein LOC104446582
TrEMBLA0A059C5T81e-111A0A059C5T8_EUCGR; Uncharacterized protein
STRINGPOPTR_0003s19110.13e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-30B3 family protein